Technical University of Denmark
Browse
.TIF
20230702_150x_15_MMStack_Default.ome.tif (4.01 GB)
.TIF
20230702_150x_15_MMStack_Default_1.ome.tif (2.26 GB)
TEXT
20230702_150x_15_MMStack_Default_metadata.txt (261.32 MB)
TEXT
readme.txt (3.73 kB)
1/0
4 files

Raw image data - DNA-PAINT on 1-micrometer PS particles

dataset
posted on 2024-10-03, 08:02 authored by Rodolphe MarieRodolphe Marie, Masih Fahim

Fluorescence microscopy data of single molecule localization microscopy (SMLM) characterization of 1 micrometer polystyrene particles using DNA-paint.

Neutravidin-coated 1 μm polystyrene particles (ThermoFisher Scientific F8777) are immobilized on a clean gridded glass coverslip (Ibidi 10816). To this end, the coverslip is first cleaned using 15-minute sonication steps in Triton-X100 and KOH interleaved with sonication in Milli-Q water for rinsing. The coverslip is then dried with nitrogen. A silicone gasket (Grace Bio-Labs SKU 103250) cut to the size of the coverslip is deposited to create a chamber and the assembly is cleaned with oxygen plasma. The cleaned coverslip is incubated with 100 μL of biotinylated BSA (Sigma Aldrich A8549) at 0.1 mg/mL for 30 minutes then rinsed with 1xPBS. Subsequently, the coverslip was incubated for 1 h with 100 μL of 100:1 diluted stock concentration of the particles, then rinsed three times with 200 μL 1xPBS. Thereafter, the sample was incubated with 100 μL of 20 μM biotinylated DNA docking strands for 1 h, washed twice in 1xPBS, and once with the imaging buffer. The docking strand sequence is 5'-biotin-TTATACATCTA-3' (IDT). The imager strand sequence is 3'-atto655-TATGTAGAT-5' (IDT). The imager solution is prepared by diluting the imager strand DNA to 50 pM in imaging buffer consisting of Buffer B with 10 mM MgC2. Both concentrations are adjusted to obtain single events on beads and minimize the background in epifluorescence imaging.

Funding

SuperCol: Rational design of super-selective and responsive colloidal particles for biomedical applications

European Commission

Find out more...

History

ORCID for corresponding depositor

Usage metrics

    DTU Health Tech

    Licence

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC