Data, model and coding-script supporting analysis for Henriksen et al. (2024), Effects of sediment type and light availability on the burying behavior of small sandeel (<i>Ammodytes tobianus</i>)

<p>This repository contains all supporting materials for the research paper by Henriksen et al. (2024), titled "Effects of sediment type and light availability on the burying behavior of small sandeel (<em>Ammodytes tobianus</em>)." Included are the README file, raw data, R script for statistical analysis, and model coding, which facilitate the replication of our findings and further exploration of sediment preferences and light influence on sandeel behavior. These materials provide a comprehensive insight into the methodology and statistical analysis applied in the study, using R and the TMB package.</p> <p><strong>Files Included</strong><br> 1. Sandeel_sediment_preference.R - Main R script for analysis - © Copyright 2024 Technical University of Denmark <a href="https://opensource.org/license/bsd-3-clause" target="_blank">BSD-3-Clause</a></p> <p>2. SedimentSandeel.csv - Dataset containing results of sediment analysis for different sediments used for each experiment <a href="https://creativecommons.org/licenses/by/4.0/" target="_blank">CCBY-4.0</a></p> <p>3. Untagged_results.csv - Dataset containing experimental results on sandeel sediment preferences for experiment 1 <a href="https://creativecommons.org/licenses/by/4.0/" target="_blank">CCBY-4.0</a></p> <p>4. Untagged_Sed2.csv - Dataset containing experimental results on sandeel sediment preferences for experiment 2 <a href="https://creativecommons.org/licenses/by/4.0/" target="_blank">CCBY-4.0</a></p> <p>5. Untagged_Sed2_length.csv - Dataset containing measured lengths of individual sandeel used in experiment 2 <a href="https://creativecommons.org/licenses/by/4.0/" target="_blank">CCBY-4.0</a></p> <p>6. Untagged_Sed2.csv - Dataset containing experimental results on sandeel sediment preferences under different light conditions for experiment 3 <a href="https://creativecommons.org/licenses/by/4.0/" target="_blank">CCBY-4.0</a></p> <p>7. raw3.cpp - multinomial model used for Exp. 1 in C++ build with template model builder (TMB) © Copyright 2024 Technical University of Denmark <a href="https://opensource.org/license/bsd-3-clause" target="_blank">BSD-3-Clause</a></p> <p>8. repmea.cpp - multinomial model used for Exp. 2 that included repeated measurements in C++ build with template model builder (TMB) © Copyright 2024 Technical University of Denmark <a href="https://opensource.org/license/bsd-3-clause" target="_blank">BSD-3-Clause</a></p> <p>9. raw5.cpp - multinomial model used for Exp. 3 having both different sediments and light levels in C++ build with template model builder (TMB) © Copyright 2024 Technical University of Denmark <a href="https://opensource.org/license/bsd-3-clause" target="_blank">BSD-3-Clause</a></p> <p>Contact: For any queries related to this script, please contact Ole Henriksen at DTU Aqua, ohen@aqua.dtu.dk, or one of the other authors of the manuscript below.</p> <p><strong>Citation</strong>:</p> <p>Henriksen, Ole; van Deurs, Mikael; Behrens, Jane (2024). Data, model and coding-script supporting analysis for Henriksen et al. (2024), Effects of sediment type and light availability on the burying behavior of small sandeel (<em>Ammodytes tobianus</em>). Technical University of Denmark. Model. https://doi.org/10.11583/DTU.25814107</p> <p>Please also see and cite following study if you use this script or its outputs:</p> <p>Henriksen et al. (2024), Effects of sediment type and light availability on the burying behavior of small sandeel (Ammodytes tobianus),<em> Journal of Experimental Marine Biology and Ecology.</em></p>