List of PFAM domains used for plasmid classification

List of PFAM domains used for plasmid classification: if a listed PFAM domain on the list is found in a non-chromosome contig, the contig was disignated 'unknown plasmid' during NCBI deposition.

This list is an updated version of the one used to classify plasmids in:

Plasmids, Viruses, And Other Circular Elements In Rat Gut. Tue Sparholt Jørgensen, Martin Asser Hansen, Zhuofei Xu, Michael A. Tabak, Søren J Sørensen, Lars Hestbjerg Hansen. bioRxiv 143420; doi: https://doi.org/10.1101/143420