Technical University of Denmark
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NPGM-contigger script

This script was written by Kai Blin and Simon Shaw and tested by Tue Sparholt Jørgensen.

The script takes as input a GFA file from the Flye (v2.9) assembler and connects the edges simplistically according to the direction and connection in the GFA "L" lines, as linear genomes with long inverted repeats will not be correctly contigged in the native Flye contigger.

The zip file was downloaded from https://github.com/biosustain/npgm-contigger on 2024-02-02


Funding

Integration of Informatics and Metabolic Engineering for the discovery of Novel Antibiotics (IIMENA)

Novo Nordisk Foundation

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NNF Center for Biosustainability (extension)

Novo Nordisk Foundation

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History

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    DTU Biosustain

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